It's not a big deal. Make sure the brake reservoir stays full. Run the lines. Connect to the ABS pump last to minimize the amount of fluid that comes out of the pump while you're working. Then bleed as normal. Paying close attention to the fluid level in the reservoir. As long as you don't let it run dry you shouldn't get any air in the pump or drain the accumulators.
Typically any decent scan tool can get to the menu to trigger the ABS bleed cycle. Even if you can't trigger the bleed cycle, all you have to do is go out for a drive and trigger the system by stomping on the brakes. Do it 2-3 times and any air in the pump will now be in the lines and can be bled out the usual way.
If you want to be fancy you can just use a vacuum pump, hand or electric, connected to the bleeder screws to draw fluid all the way through the system. You just have to have someone hold the pedal to the floor or wedge it there with a prybar, board etc... This will keep the master cyl's piston in the correct position for fluid to be pulled from the reservoir to the calipers. Just draw fluid until you see new clean fluid coming out of the pump then seal the bleeder screw. Rinse and repeat for each wheel. RR, LR, RF, LF. Just make sure there is always fluid in the reservoir. I can't stress that enough.
Pro tip: Any bolt with the correct diameter and thread pitch can be used to plug the outputs from the ABS pump while you work. Also Pre-bent lines can be a PITA to install with the body, driveline and crossmembers in place. It's usually easier to feed in line from a spool and bend as you go/need. Then just cut and flare the ends.
FWIW, If I still lived there I probably would have done the job for $200.